Hi Matthew,
Attached are the results of strace -rx

j
On 03/27/2015 12:23 PM, Matthew Webster wrote:
> Hello Jason,
>                        Thanks - everything looks OK - maybe you can send the stack trace as well?
> Kind Regards
> Matthew
>
>

-- 
Jason F. Smith, Ph.D.                           _.--~~~.~-._
Affective and Translational Neuroscience Lab  .(      ./    ).
Department of Psychology                     (        {       ).
University of Maryland College Park         ('        / _    ./ )
[log in to unmask]                            ('      .~~~'    /   .}
Rm 1024c BPS building                      (    .~~              )
College Park MD, 20742-4411                 '~~(        _,,'{{}}'
PH) 301.405.1566                                '..:~~'' {{{}}}




     0.000000 execve("/cell_root/software/fsl/new/sys/bin/fslview", ["fslview", "minimalConjunction.nii"], [/* 63 vars */]) = 0
     0.000461 brk(0)                    = 0xfc7000
     0.000095 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f928607d000
     0.000098 access("/etc/ld.so.preload", R_OK) = -1 ENOENT (No such file or directory)
     0.000082 open("/cell_root/software/fsl/new/sys/lib/tls/x86_64/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000107 stat("/cell_root/software/fsl/new/sys/lib/tls/x86_64", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000073 open("/cell_root/software/fsl/new/sys/lib/tls/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000112 stat("/cell_root/software/fsl/new/sys/lib/tls", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000051 open("/cell_root/software/fsl/new/sys/lib/x86_64/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000053 stat("/cell_root/software/fsl/new/sys/lib/x86_64", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000055 open("/cell_root/software/fsl/new/sys/lib/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000051 stat("/cell_root/software/fsl/new/sys/lib", {st_mode=S_IFDIR|0755, st_size=6144, ...}) = 0
     0.000059 open("/export/software/cuda/6.5/lib64/tls/x86_64/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000043 stat("/export/software/cuda/6.5/lib64/tls/x86_64", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000047 open("/export/software/cuda/6.5/lib64/tls/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000043 stat("/export/software/cuda/6.5/lib64/tls", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000041 open("/export/software/cuda/6.5/lib64/x86_64/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000045 stat("/export/software/cuda/6.5/lib64/x86_64", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000049 open("/export/software/cuda/6.5/lib64/libtinfo.so.5", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000041 stat("/export/software/cuda/6.5/lib64", 0x7fff4d76e430) = -1 ENOENT (No such file or directory)
     0.000042 open("/etc/ld.so.cache", O_RDONLY) = 3
     0.000041 fstat(3, {st_mode=S_IFREG|0644, st_size=158284, ...}) = 0
     0.000059 mmap(NULL, 158284, PROT_READ, MAP_PRIVATE, 3, 0) = 0x7f9286056000
     0.000038 close(3)                  = 0
     0.000046 open("/lib64/libtinfo.so.5", O_RDONLY) = 3
     0.000046 read(3, "\x7f\x45\x4c\x46\x02\x01\x01\x00\x00\x00\x00\x00\x00\x00\x00\x00\x03\x00\x3e\x00\x01\x00\x00\x00\x40\xc8\x00\x00\x00\x00\x00\x00"..., 832) = 832
     0.000048 fstat(3, {st_mode=S_IFREG|0755, st_size=135896, ...}) = 0
     0.000048 mmap(NULL, 2232320, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f9285c3e000
     0.000040 mprotect(0x7f9285c5b000, 2097152, PROT_NONE) = 0
     0.000039 mmap(0x7f9285e5b000, 16384, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1d000) = 0x7f9285e5b000
     0.000051 close(3)                  = 0
     0.000041 open("/cell_root/software/fsl/new/sys/lib/libdl.so.2", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000059 open("/lib64/libdl.so.2", O_RDONLY) = 3
     0.000041 read(3, "\x7f\x45\x4c\x46\x02\x01\x01\x00\x00\x00\x00\x00\x00\x00\x00\x00\x03\x00\x3e\x00\x01\x00\x00\x00\xe0\x0d\x00\x00\x00\x00\x00\x00"..., 832) = 832
     0.000043 fstat(3, {st_mode=S_IFREG|0755, st_size=19536, ...}) = 0
     0.000052 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9286055000
     0.000042 mmap(NULL, 2109696, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f9285a3a000
     0.000038 mprotect(0x7f9285a3c000, 2097152, PROT_NONE) = 0
     0.000039 mmap(0x7f9285c3c000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x2000) = 0x7f9285c3c000
     0.000044 close(3)                  = 0
     0.000039 open("/cell_root/software/fsl/new/sys/lib/libc.so.6", O_RDONLY) = -1 ENOENT (No such file or directory)
     0.000061 open("/lib64/libc.so.6", O_RDONLY) = 3
     0.000041 read(3, "\x7f\x45\x4c\x46\x02\x01\x01\x03\x00\x00\x00\x00\x00\x00\x00\x00\x03\x00\x3e\x00\x01\x00\x00\x00\x70\xee\x01\x00\x00\x00\x00\x00"..., 832) = 832
     0.000043 fstat(3, {st_mode=S_IFREG|0755, st_size=1921176, ...}) = 0
     0.000047 mmap(NULL, 3750152, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 3, 0) = 0x7f92856a6000
     0.000038 mprotect(0x7f9285830000, 2097152, PROT_NONE) = 0
     0.000207 mmap(0x7f9285a30000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x18a000) = 0x7f9285a30000
     0.000043 mmap(0x7f9285a35000, 18696, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7f9285a35000
     0.000041 close(3)                  = 0
     0.000048 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9286054000
     0.000041 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9286053000
     0.000043 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f9286052000
     0.000039 arch_prctl(ARCH_SET_FS, 0x7f9286053700) = 0
     0.000091 mprotect(0x7f9285a30000, 16384, PROT_READ) = 0
     0.000041 mprotect(0x7f9285c3c000, 4096, PROT_READ) = 0
     0.000072 mprotect(0x7f928607e000, 4096, PROT_READ) = 0
     0.000040 munmap(0x7f9286056000, 158284) = 0
     0.000061 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000049 open("/dev/tty", O_RDWR|O_NONBLOCK) = 3
     0.000052 close(3)                  = 0
     0.000056 brk(0)                    = 0xfc7000
     0.000067 brk(0xfe8000)             = 0xfe8000
     0.000049 getuid()                  = 258167
     0.000036 getgid()                  = 100
     0.000036 geteuid()                 = 258167
     0.000036 getegid()                 = 100
     0.000048 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000059 open("/proc/meminfo", O_RDONLY|O_CLOEXEC) = 3
     0.000049 fstat(3, {st_mode=S_IFREG|0444, st_size=0, ...}) = 0
     0.000054 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f928607c000
     0.000038 read(3, "MemTotal:       66059104 kB\nMemF"..., 1024) = 1024
     0.000518 close(3)                  = 0
     0.000038 munmap(0x7f928607c000, 4096) = 0
     0.000070 rt_sigaction(SIGCHLD, {SIG_DFL, [], SA_RESTORER|SA_RESTART, 0x7f92856d86a0}, {SIG_DFL, [], 0}, 8) = 0
     0.000054 rt_sigaction(SIGCHLD, {SIG_DFL, [], SA_RESTORER|SA_RESTART, 0x7f92856d86a0}, {SIG_DFL, [], SA_RESTORER|SA_RESTART, 0x7f92856d86a0}, 8) = 0
     0.000056 rt_sigaction(SIGINT, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, {SIG_DFL, [], 0}, 8) = 0
     0.000068 rt_sigaction(SIGINT, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, 8) = 0
     0.000062 rt_sigaction(SIGQUIT, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, {SIG_DFL, [], 0}, 8) = 0
     0.000049 rt_sigaction(SIGQUIT, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, 8) = 0
     0.000058 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000039 rt_sigaction(SIGQUIT, {SIG_IGN, [], SA_RESTORER, 0x7f92856d86a0}, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, 8) = 0
     0.000055 uname({sys="Linux", node="badger.umd.edu", ...}) = 0
     0.000105 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000077 stat("/data/badger1/study/acc2/RESULTS", {st_mode=S_IFDIR|S_ISGID|0755, st_size=43, ...}) = 0
     0.000147 stat(".", {st_mode=S_IFDIR|S_ISGID|0755, st_size=43, ...}) = 0
     0.000050 getpid()                  = 29311
     0.000052 getppid()                 = 29310
     0.000067 getpgrp()                 = 29310
     0.000038 rt_sigaction(SIGCHLD, {0x43f540, [], SA_RESTORER|SA_RESTART, 0x7f92856d86a0}, {SIG_DFL, [], SA_RESTORER|SA_RESTART, 0x7f92856d86a0}, 8) = 0
     0.000054 getrlimit(RLIMIT_NPROC, {rlim_cur=1024, rlim_max=515904}) = 0
     0.000100 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000044 open("/cell_root/software/fsl/new/sys/bin/fslview", O_RDONLY) = 3
     0.000059 ioctl(3, SNDCTL_TMR_TIMEBASE or TCGETS, 0x7fff4d76ead0) = -1 EINVAL (Invalid argument)
     0.000055 lseek(3, 0, SEEK_CUR)     = 0
     0.000040 read(3, "#!/bin/sh\n \nLD_LIBRARY_PATH=${FS"..., 80) = 80
     0.000040 lseek(3, 0, SEEK_SET)     = 0
     0.000037 getrlimit(RLIMIT_NOFILE, {rlim_cur=1024, rlim_max=4*1024}) = 0
     0.000039 fcntl(255, F_GETFD)       = -1 EBADF (Bad file descriptor)
     0.000040 dup2(3, 255)              = 255
     0.000037 close(3)                  = 0
     0.000036 fcntl(255, F_SETFD, FD_CLOEXEC) = 0
     0.000044 fcntl(255, F_GETFL)       = 0x8000 (flags O_RDONLY|O_LARGEFILE)
     0.000037 fstat(255, {st_mode=S_IFREG|0755, st_size=117, ...}) = 0
     0.000047 lseek(255, 0, SEEK_CUR)   = 0
     0.000044 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000040 read(255, "#!/bin/sh\n \nLD_LIBRARY_PATH=${FS"..., 117) = 117
     0.000042 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000039 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000071 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000056 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000040 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000070 rt_sigprocmask(SIG_BLOCK, [INT CHLD], [], 8) = 0
     0.000044 lseek(255, -2, SEEK_CUR)  = 115
     0.000041 clone(child_stack=0, flags=CLONE_CHILD_CLEARTID|CLONE_CHILD_SETTID|SIGCHLD, child_tidptr=0x7f92860539d0) = 29312
     0.000095 rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
     0.000051 rt_sigprocmask(SIG_BLOCK, [CHLD], [], 8) = 0
     0.000046 rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
     0.000043 rt_sigprocmask(SIG_BLOCK, [CHLD], [], 8) = 0
     0.000041 rt_sigaction(SIGINT, {0x43d2f0, [], SA_RESTORER, 0x7f92856d86a0}, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, 8) = 0
     0.000057 wait4(-1, [{WIFSIGNALED(s) && WTERMSIG(s) == SIGSEGV && WCOREDUMP(s)}], 0, NULL) = 29312
     0.127474 fstat(2, {st_mode=S_IFCHR|0620, st_rdev=makedev(136, 0), ...}) = 0
     0.000053 mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f928607c000
     0.000054 write(2, "/cell_root/software/fsl/new/sys/"..., 126) = 126
     0.000061 rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
     0.000040 --- SIGCHLD (Child exited) @ 0 (0) ---
     0.000014 wait4(-1, 0x7fff4d76e41c, WNOHANG, NULL) = -1 ECHILD (No child processes)
     0.000038 rt_sigreturn(0xffffffffffffffff) = 0
     0.000037 rt_sigaction(SIGINT, {SIG_DFL, [], SA_RESTORER, 0x7f92856d86a0}, {0x43d2f0, [], SA_RESTORER, 0x7f92856d86a0}, 8) = 0
     0.000053 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000039 read(255, " \n", 117)     = 2
     0.000760 rt_sigprocmask(SIG_BLOCK, NULL, [], 8) = 0
     0.000046 read(255, "", 117)        = 0
     0.000051 exit_group(139)           = ?