I hope this will be more informative.
The acquisition parameters are as follows:
TR 7s, TE 80 ms, flip angle 90°, FOV 220x220 mm², 1.7x1.7x1.7mm³, multi-band accel. factor 2, diffusion directions 67, b-value 1000s/mm²
acqparams.txt
0 -1 0 0.0499
0 1 0 0.0499
I used the following command and try to run it over several servers.
The difference between the error messages was just "segmentation fault" or "segmentation fault (core dumped)".
topup --imain=AP_PA_foll_CTL_DESC0401_b0 --datain=acqparams.txt --out=topup_AP_PA_foll_CTL_DESC0401_b
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