Dear FSL experts.
I did TBSS analysis (just I ran the 4 scripts, without Randomise) to generate all_FA_skeletonized.
I am interested in calculating the mean FA in the cortico spinal tract.
- Is is correct technically if I create a 4D mask for the corticospinal tract(from all_FA_skeletonized depending on JUH atlas) then I include this mask in the following command line:
fslmeants -i all_FA_skeletonized -m my 4D mask
- Can I include the output of the previous command line (FA values) in a Bayesian analysis or I correct it for multiple comparisons using FDR or Bonferroni methods?
Thanks,
Antoine
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