Hi Jian,
Try the attached script.
Kai
On Fri, 2015-02-27 at 20:42 +0000, Guan, Jian wrote:
> Hi Sjors,
>
> I met a problem recently when I deal with movie data. I followed
> manual. After ran the CTF estimation, it didn’t generate the
> xxxx_ctf.star file. However, I can find all ctf files in the
> Micrographs folder with for each mrc files, for example, ctffind3.com,
> and ctffind3.log. I used ctffind4 to do the ctf correction.
>
> Is there a way or command to generate the ctf_star file from the
> results in Micrographs folder? Why did it happen? How to correct it?
>
> The command line I used is shown below
>
> /opt/relion/1.3/bin/relion_run_ctffind_mpi --i all_AVG.star --o
> all_AVG_ctf.star --ctfWin -1 --CS 2 --HT 300 --AmpCnst 0.1 --XMAG
> 122058 --DStep 14 --Box 512 --ResMin 100 --ResMax 7 --dFMin 5000
> --dFMax 50000 --FStep 500 --dAst 0
> --ctffind3_exe /opt/ctffind/4.0.8/bin/ctffind --omp-num-threads 1
> --old-school-input"
>
> Thanks a lot.
>
> You have a wonderful weekend.
>
> Sincerely yours,
>
> Jian
>
>
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