Dear Charlie,
could it be related to that furanose atoms now have primes (') instead
of asterisks (*) in their names?
Best,
Tim
On 02/04/2015 05:30 PM, Carter, Charlie wrote:
> I'm (still) using ccp4.6.1.1.
>
> Scripts that used to superimpose one tRNA on another now all return the error
>
> YOU HAVE FAILED TO FIND ANY ATOMS TO FIT
>
> I've looked high and low for a reason for this and failed. The pdb files themselves look normal and behave well in PYMOL. They have CRYST1 cards. I cannot even superimpose a file on itself!
>
> Anyone have any suggestions?
>
> Thanks so much,
>
> Charlie
>
> here is what I'm trying to implement:
>
> lsqkab XYZIN1 $1 XYZIN2 $2 XYZOUT $2_$1 >$2_$1.log << END-lsqkab
> FIT RESIDUE MAIN 2 TO 6
> MATCH 2 to 6
> FIT RESIDUE MAIN 68 TO 72
> MATCH 68 to 72
> OUTPUT XYZ
> END
> END-lsqkab
>
--
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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