Coot thinks that PISA version is < 1.06, although it's 2.0.2.
That coot extension (and many others) have two versions, one in Scheme
and one in Python. The latter works, but it's not in the menu. As a
workaround: Calculate > Scripting > Python and type:
molecule_chooser_gui("Choose molecule", pisa_interfaces)
and press Enter.
Or pisa_assemblies instead of pisa_interfaces, depending what you want.
BTW you can only issue one command in that little window,
the second one gives error:
File "/home/wojdyr/ccp4/ccp4-6.5/lib/python2.7/site-packages/coot/coot_gui.py", line 125, in warning_event
tag1 = textbuffer.create_tag(foreground="red",weight=pango.WEIGHT_BOLD)
NameError: free variable 'textbuffer' referenced before assignment in enclosing scope
Marcin
On Mon, Feb 09, 2015 at 05:20:41PM +0100, Maria Jose Sanchez Barrena wrote:
> Dear all,
> I am using Coot 0.8.1, that is part of the CCP4 version 6.1. When trying to run PISA from Coot, after choosing the pdf file, I get the following message: “your pisa version is too old. Need at least v1.06”. However, when running CCP4mg (part of the same CCP4 package), I am able to run PISA and get these wonderful interaction surfaces and so on…
> I find all this quite difficult to understand…. Any suggestion about what´s going on?
>
> Many thanks in advance,
>
> Maria José
--
This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd.
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
|