OK, I've made the max now 30 (hopefully that is enough!) and made the default 10 for a new project. (Patch for Analysis 2.4.1.)
Wayne
On 24 Feb 2015, at 18:00, Van der Wel, Patrick wrote:
> Wayne,
>
> If you’re working on this anyway: it seems like the initial default for max marks is currently set to a small value, lower than the max of 10 (for a new project). This implies that I commonly have to increase this number, unless i start with an existing project file. Is there any practical reason for a small default, and/or would it be possible to set this now to 10 or 20 initially?
>
> Patrick
>
>> On Feb 24, 2015, at 1:03 PM, Aswani Kumar Kancherla <[log in to unmask]> wrote:
>>
>> Hello Dr Wayne,
>>
>> Many thanks for your prompt reply. I am now able to draw up to 20
>> multidimensional marks.
>>
>> I feel that 20 is reasonable upper bound for number of marks. For example, when
>> I am looking at the residue Lysine, I need 5 marks to highlight all the carbons
>> (C-alpha to C-epsilon say in Ccc(co)NH spectrum ) and about 8 to 10 marks to
>> highlight all the protons (in Hcc(co)NH spectrum). That makes it 13 to 15 marks.
>> ( The intersection of these marks will give me the location of proton-carbon
>> correlations in 1H,13C-HSQC spectrum.)
>>
>> So, I feel that you could probably make the default value for maximum number of
>> marks to be 20 (and let it go as high as 30 using the command line assignment
>> for "top.analysisProject.maxMarks" when one really needs).
>>
>> with regards,
>> Aswani
>>
>>> Hello,
>>>
>>> On the Python command line (so in the shell where you start Analysis up) you can
>>> type the following to get up to (say) 20 marks:
>>>
>>> top.analysisProject.maxMarks = 20
>>>
>>> If you open up the Window: Marks and Rulers dialog it might trample it back down
>>> to 10, but if so just use the above again.
>>>
>>> What is a reasonable upper bound on the number of marks?? I could change the 10
>>> in the code easily enough (rather than you having to always type the above every
>>> time you start up Analysis).
>>>
>>> Wayne
>>>
>>> On 24 Feb 2015, at 14:52, Aswani Kumar wrote:
>>>
>>>> Hello Analysis Developers/Users,
>>>>
>>>> I have been trying to assign proton side-chains and subsequently 13C and 15N
>>>> edited NOESY ( I am using a set of Hcc(co)NH, HccH-TOCSY, TOCSY-15N-HSQC,
>>>> NOESY-15N-HSQC, Ccc(co)NH and so on).
>>>>
>>>> While trying to assign residues having long side-chains (such as Lys, Arg and
>>>> Met), I find that the maximum number of marks (which is currently 10) is not
>>>> sufficient. As I mark more than 10 peaks, the oldest ones keep disappearing.
>>>>
>>>> Though it is not severely limiting, I prefer to see the full ladder with all
>>>> the cross peaks marked. Is it possible to increase the maximum number of
>>>> marks? or is there any way out? or am I missing something?
>>>>
>>>> thanking you in advance,
>>>>
>>>> with regards,
>>>> Aswani
>>>>
>>>> --
>>>> K.Aswani Kumar, PhD Student,
>>>> Molecular Biophysics Unit,
>>>> Indian Institute of Science,
>>>> Bangalore-560012, India.
>>>
>>> --
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>>>
>>
>>
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