Thanks for the reply Paul.
I have uploaded the files used in the following commands:
applywarp --abs -v -i HemiQ3in.nii -r HemiQ3ref.nii -w test.nii.gz -o checkabs.nii
applywarp --rel -v -i HemiQ3in.nii -r HemiQ3ref.nii -w test.nii.gz -o checkrel.nii
Note that test.nii.gz is a relative warpfield.
-Arnold
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