Dear Michael,
I think the problem was the analysis using PASL without background
suppression. In this case the program uses automatically the control
images for M0. The option to upload a separate M0 is not possible via
GUI. Meanwhile I figured out to transfer the appropriate commands into
a script file.
Best
Ralf
Ralf Veit PhD
Institute of Medical Psychology and Behavioral Neurobiology
Otfried-Müller str. 47
72076 Tübingen
phone: +49-7071-2987703
fax: +49-7071-295706
Zitat von Michael Chappell <[log in to unmask]>:
> Ralf,
>
> The command line calls that Asl_gui makes are almost all you need to
> reproduce the analysis, there is probably a small amount of internal
> file name manipulation that means you cannot make a direct copy and
> so you might need to do a little checking of the actual command line
> calls otherwise you will get errors as you have noticed. I am afraid
> that this was not functionality that we deliberately built into this
> beta version of the GUI.
>
> Michael
>
>
> On 22 Jan 2015, at 13:43, Ralf Veit
> <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Dear list,
>
> I would like to ask whether its possible to transfer the
> informations and specifications that I made via the Asl_gui into a
> script file? I copied the commands listed of asl_file, oxford_asl
> and asl_calib after running the Asl_gui but I received several error
> messages (directories not present, files like asldata_mc_even.nii.gz
> are not created).
>
> Best
> Ralf
>
>
>
> ---
> Michael Chappell MEng DPhil
> W: http://www.ibme.ox.ac.uk/qubic
> T: +44 1865 617657
> Associate Professor, Institute of Biomedical Engineering, University
> of Oxford.
> http://www.ibme.ox.ac.uk
> Director of Training, EPSRC-MRC CDT in Biomedical Imaging
> http://www.onbi.ox.ac.uk
> Governing Body Fellow, Wolfson College, Oxford.
> http://www.wolfson.ox.ac.uk
> Research Fellow, FMRIB Centre
> http://www.fmrib.ox.ac.uk
>
>
>
>
>
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