Happy New Year indeed.
we are aware that there are a few bugs with respect to loosing insertion
codes. A fix I committed earlier got lost but will be available in the
next pre-release...
Bernhard
On 03/01/2015 00:03, Dale Tronrud wrote:
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> Happy New Year,
>
> I have been comparing the two PDB entries 2EWD and 4ND2 to try to
> figure out why the older was replaced by the latter. This task is
> surprising hard with Coot, but that is not my issue.
>
> When I SSM superimposed the A chain from each model a potion of the
> text printed to the terminal was confusing. (sorry but I can't figure
> out how to cut from a DOS window so I've attached a screen shot.) You
> will note that residue 208 matches 208 and 209 matches 209 but then
> 209 matches 209 again and then 210 matches 209 and then again 210
> matches 209. The answer to this riddle is that on the left there
> really should be 209A, 209B, 210A, and 210B while on the right it
> should be 209 A through D and 210A and 210B. The SSM code is not
> writing the insertion codes to the output.
>
> A second issue becomes apparent when I open the "Go To Atom..."
> dialog box and select 2ewd!A|209A. All four 209 residues are properly
> shown in the residue table. The atom table, however shows the atoms
> for all four 209 residues. This table is identical when each of the
> 209 residues are selected. If I select 209A and double-click on the
> fourth CA atom I am, indeed, taken to 209D.
>
> Dale Tronrud
>
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--
***************************************************
Dr. Bernhard Lohkamp
Associate Professor/Docent
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
S-17177 Stockholm
Sweden
phone: (+46) 08-52487651
fax: (+46) 08-327626
email: [log in to unmask]
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