Dear Sjors,
We managed to compile Relion with SGI mpi compiler on our cluster.
During the test-run on tutorial data, the 2D classification finished all
fine, but the 3D classification gives error after first round. DO you
have any suggestion?
Thanks and Regards,
Jian
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+ Slave 10 runs on host = kahuna
+ Slave 11 runs on host = kahuna
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MlOptimiser::initialiseGeneral: WARNING modifying pixel size from 1 to
3.54 based on magnification information in the input STAR file
Estimating initial noise spectra
2/ 2 sec
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CurrentResolution= 59 Angstroms, which requires orientationSampling of
at least 32.7273 degrees for a particle of diameter 200 Angstroms
Oversampling= 0 NrHiddenVariableSamplingPoints= 387072
OrientationalSampling= 15 NrOrientations= 4608
TranslationalSampling= 2 NrTranslations= 21
=============================
Oversampling= 1 NrHiddenVariableSamplingPoints= 12386304
OrientationalSampling= 7.5 NrOrientations= 36864
TranslationalSampling= 1 NrTranslations= 84
=============================
Estimated memory for expectation step > 0.861024 Gb, available memory
= 24 Gb.
Estimated memory for maximization step > 0.0102344 Gb, available
memory = 24 Gb.
Expectation iteration 1 of 25
10.95/10.95 min
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Maximization ...
2/ 2 sec
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Estimating accuracies in the orientational assignment ...
MPT ERROR: STDOUT or STDERR buffer exhausted.
MPI: Set MPI_UNBUFFERED_STDIO or output no more than about 8192 characters
MPI: between newlines.
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