Hi,
For tracts in diffusion space you can use the b0 image as an underlay (or any other image in the diffusion space, such as mean_f1samples).
All the best,
Mark
> On 2 Dec 2014, at 19:25, Emily Louise Belleau <[log in to unmask]> wrote:
>
> Hello FSL experts,
>
> I am trying to figure out how best to visualize my white matter tracts?
>
> I tried using 3dViewer but have been unsuccessful.
>
> I created my tracts using Probtractx. These tracts are in diffusion space.
>
> What is the appropriate underlay to use (assuming it is something from the bedpostx ouput, and I can't use the MNI template since the tracts are in diffusion space)?
>
> If anyone can give me some additional guidance on visualizing the tracts I would very much appreciate it!
>
> Thanks,
>
> Emily
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