Dear Pietro,
zlib is the C compression library. You must have some version of libz.so
installed in order to link againt it.
Regards,
Tim
On 12/15/2014 05:36 PM, Pietro Roversi wrote:
> Dear all,
>
> I apologise for the dullness of the question, but I am struggling to compile the fasta36 binary that I need to run MrBump:
>
>
> emmaWT:/software/fasta-36.3.7/src> sudo make -f ../make/Makefile.linux64_sse2 all
> gcc -g -O -msse2 -o ../bin/fasta36 comp_mthr9.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -lpthread
> /usr/bin/ld: cannot find -lz
> collect2: error: ld returned 1 exit status
> make: *** [fasta36] Error 1
>
> Googling for this -lz ld flag does not seem to hit anything immediately relevant in the top pages.
>
> Please help!
>
> Pietro
>
>
> Sent from my Desktop
>
> Dr. Pietro Roversi
> Oxford University Biochemistry Department - Glycobiology Division
> South Parks Road
> Oxford OX1 3QU England - UK
> Tel. 0044 1865 275339
>
--
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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