Dear abhishek,
one work-around is to split the PDB-file into four different PDB-files,
one per chain, and concatenate the results back together.
Alternatively you can try Coot to calculate the ESP.
Bst,
Tim
On 12/09/2014 02:23 PM, abhishek jamwal wrote:
> Dear All,
>
> I wish to generate electrostatics surface cartoon for a protein, which is
> a tetramer.
>
> I am using pdb to pqr server (http://nbcr-222.ucsd.edu/pdb2pqr_1.8/) to
> generate .pqr files as part of this process.
>
> I find that server is able to genetrate .pqr file contents, only when input
> pdb file contains a single chain (monomer), it is failing to do the same
> when I give it tetramer pdb co-ordinates, why is that ? and how can I
> generate a .pqr file for teramer...what other options do I have ?
>
> many thanks in adavnce
>
> abhishek
>
--
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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