Dear FSL experts and users,
Could you be so kind and respond to my query (see below)?
Thanks in advance!
Regards,
Mauricio
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Dear Stephen thanks for the reply!
Two remaining questions though: 1) how can we include the MCflirt 6 or 24 motion parameters in the FIX cleanup (i.e. so which option should be selected in FIX), 2) how can we integrate for instance WM and CSF timecourse into the FIX cleanup and is it necessary to do so since we first apply fix on our pre-processed RS-fMRI data and extract WM and CSF timecourse after the FIX procedure from the cleaned-up RS-fMRI data (filtered_func_data_clean.nii.gz) for later confound regression.
Thanks in advance for your input!
Regards,
Mauricio
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