Dear Mark,
I Have a suspicion that my question is not posted before so I am posting it again!
I have two groups of subjects. I ran the TBSS analysis and I got the results after running the randomise command line.
Now if I want to calculate the mean FA on the subject's skeleton (for every subject). Is it valid to generate a skeleton for the white matter for every subject by running the TBSS scripts (1---> 4) for the subjects one by one i.e running the TBSS scripts on one subject every time ? then by running the following command line (fslstats -t all_FA -k mean_FA_skeleton_mask -M) I can calculate the mean FA on the skeleton for every subject?
I highly appreciate your opinion and any other ideas!
Thanks
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