Hi
On 21 Nov 2014, at 10:58, Christophe Habas <[log in to unmask]> wrote:
> Hello,
>
> Thanks!
>
> - all the .png files in groupica.ica/melodic_IC.sum have been generated correctly ==> i got N columns of 3 axial slices from MNI template
I guess also with the N components overlaid on the MNI template (similar to the melodic report)?
>
> - the .sum folder is called in the same way as your group maps file (in this case melodic_IC) and it is in the same folder (groupica.ica) ==> yes
from your error message I can see that you have your .sum directory in:
RP_late_blind.gica/groupmelodic/melodic_IC.sum
where is the melodic_IC.nii.gz file you used to generate the results?
The correct location would be in RP_late_blind.gica/groupmelodic otherwise you have to change it.
>
> - the paths in the nets_examples are set correctly (lines 10 to 13), especially addpath(sprintf('%s/etc/matlab',getenv('FSLDIR')) ==> what doesthis path represent ?
To be able to call some fsl functions requested by FSLNets
After having checked everything, did you get exactly the same error?
>
> and what does the Figure 1 with curves represent?
For details about all the functions and their outputs, please see:
http://fsl.fmrib.ox.ac.uk/fslcourse/lectures/practicals/rfMRIconnectivity/index.html
>
> Again thank you.
>
> Best,
> Christophe
Best,
Ludovica
—
Ludovica Griffanti, PhD
Analysis Postdoctoral Research Assistant
Oxford Centre for Functional MRI of the Brain (FMRIB)
Nuffield Department of Clinical Neurosciences, University of Oxford
John Radcliffe Hospital
Oxford, OX3 9DU, UK
email: [log in to unmask]
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