Hi,
as pointed out by Jan this should certainly not happen. If I understand
the issue right then a LINK is created for every real space refinement.
Which version of Coot are you using, which operating system, etc. I
think we need some more information to fix this. BTW I assume your pdb
file is free of (unwanted) LINK(R) records now (please check - maybe
your refinement program created these...).
Bernhard
On 05/11/2014 06:16, ly wrote:
> Hi Jan,
> Thank you very much!
> It worked.
> Another problem is that the unexpected linker always formed during fit
> the residue to the map. Are there any parameter setting or python
> script using for the function of Real Space Refinement or Regularize
> zone to avoid this problem ?
>
> Dorothy
>
>
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Dr. Bernhard Lohkamp
Associate Professor/Docent
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
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