Hi Mark,
Thank you for your response! This makes sense-- I did not realize that the MNI atlases were in 1mm space. I was using data from the Human Connectome database (0.7 mm isotropic resolution) and thought that registering the anatomical images to the 0.5mm MNI atlases would be better. But I realized that this wasn't necessary and am now using the 1mm MNI standard.
I am currently running FSL on VMware Player version 6.0.3 for Windows.
Best wishes,
Samantha
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