Dear Pam,
the Coot bug has long been worked out - Coot is now at release version 0.8.
Best,
Tim
On 10/24/2014 04:02 PM, Pamela J Focia wrote:
>
> Until the Coot bug is worked out, why not simply change the water molecule you want to be an ion into the atom you want it to be in the pdb file with a text editor?
>
> -=pam
>
>
> On Oct 24, 2014, at 5:09 AM, Tim Gruene <[log in to unmask]<mailto:[log in to unmask]>> wrote:
>
> Dear Jeorge,
>
> from the second last thread, I guess you are using Coot 0.7.2?
> Apparently this is a bug that you get around by updating Coot.
>
> Regards,
> Tim
>
> On 10/24/2014 10:13 AM, jeorgemarley thomas wrote:
> Hi All,
>
> First of all sorry to ask such simple question over here. I have added
> water molecule in my protein molecule in coot, also some Ba atom. I have
> added the water molecule manually as when it was added automatically the
> water added everywhere it find lobes of electron density. And also when I
> add Ba atom it gets converted as water molecule.
>
> Your kind help will be greatly appreciated
> Regards
>
> Jeorge
>
>
> --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
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> D-37077 Goettingen
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> -------
> ----
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> Pamela J. Focia, Ph.D.
> Research Assistant Professor
>
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> Robert H. Lurie Comprehensive Cancer Center
> in the Departments of:
> Molecular Pharmacology and Biological Chemistry, Feinberg School of Medicine,
> and Molecular Biosciences, Northwestern University
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--
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
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