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Hello FSL experts,
I am trying to run a script that combines both FSL and AFNI commands.
My colleague was able to run it successfully, but I am having trouble at the FNIRT non-linear warping stage.
I am trying to run the script on a computer cluster for parallel processing.
I ran into the following error:
ERROR (nifti_image_read): failed to find header file for '/home/ebelleau/data/Emily_For_Cluster/sub202/sub202.No_Registration_Post/sub202_nonlinear_transf1mm'
** ERROR: nifti_image_open(/home/ebelleau/data/Emily_For_Cluster/sub202/sub202.No_Registration_Post/sub202_nonlinear_transf1mm): bad header info
ERROR: failed to open file /home/ebelleau/data/Emily_For_Cluster/sub202/sub202.No_Registration_Post/sub202_nonlinear_transf1mm
ERROR: Could not open image /home/ebelleau/data/Emily_For_Cluster/sub202/sub202.No_Registration_Post/sub202_nonlinear_transf1mm
Image Exception : #22 :: Failed to read volume /home/ebelleau/data/Emily_For_Cluster/sub202/sub202.No_Registration_Post/sub202_nonlinear_transf1mm
An error occured while reading file: /home/ebelleau/data/Emily_For_Cluster/sub202/sub202.No_Registration_Post/sub202_nonlinear_transf1mm
Perhaps it has something to do with how I am calling things in the script? Any thoughts you have would be greatly appreciated!
Emily
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