hi,
I have installed fsl on ubuntu 12.04 from neurodebian site. I run /usr/bin/time ./RUN all to check fsl installation but unfortunately fsl has not been installed correctly I attached my log file .
I would really appreciate if anybody could help me.
mahsa
mahsa@mahsa-TA870:~/Desktop$ cd /home/mahsa/Desktop/feeds
mahsa@mahsa-TA870:~/Desktop/feeds$ /usr/bin/time ./RUN all
FSL Evaluation and Example Data Suite v5.0.7
start time = Sun Aug 24 07:02:09 IRDT 2014
hostname = mahsa-TA870
os = Linux mahsa-TA870 3.2.0-67-generic-pae #101-Ubuntu SMP Tue Jul 15 18:04:54 UTC 2014 i686 athlon i386 GNU/Linux
/bin/rm -rf /home/mahsa/Desktop/feeds/results ; mkdir /home/mahsa/Desktop/feeds/results
Starting PRELUDE & FUGUE at Sun Aug 24 07:02:09 IRDT 2014
% error = 0.0
% error = 0.0
Starting SUSAN at Sun Aug 24 07:02:10 IRDT 2014
% error = 0.03
Starting SIENAX (including testing BET and FLIRT and FAST) at Sun Aug 24 07:03:29 IRDT 2014
checking error on BET:
% error = 0.0
checking error on FLIRT:
% error = 0.03
checking error on FAST:
checking error on single-image binary segmentation:
% error = 0.37
checking error on partial volume images:
% error = 0.28
% error = 0.41
% error = 0.29
checking error on SIENAX volume outputs:
% error = 0.21
% error = 0.1
% error = 0.51
% error = 0.05
% error = 0.57
Starting BET2 at Sun Aug 24 07:12:12 IRDT 2014
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
% error = 0.12
% error = 0.23
% error = 0.33
Starting FEAT at Sun Aug 24 07:19:26 IRDT 2014
checking error on filtered functional data:
% error = 0.38
checking error on raw Z stat images:
% error = 0.44
% error = 0.3
% error = 0.39
checking error on thresholded Z stat images:
% error = 0.43
% error = 0.36
% error = 0.47
checking error on registration images:
% error = 0.0
% error = 0.02
checking error on position of largest cluster of Talairached zfstat1:
% error = 0.0
% error = 0.02
% error = 0.01
% error = 0.1
% error = 0.12
% error = 0.06
Starting MELODIC at Sun Aug 24 07:26:17 IRDT 2014
% error = 0.66
Starting FIRST at Sun Aug 24 07:30:50 IRDT 2014
% error = 0.68
Starting FDT (bedpost) at Sun Aug 24 07:37:46 IRDT 2014
Killed
while executing
"fsl:exec "unset FSLMACHINELIST DYLD_LIBRARY_PATH LD_LIBRARY_PATH; ${FSLDIR}/bin/bedpostx $FEEDSDIR/results/fdt_subj1 -n 1""
invoked from within
"if { $feeds(fdt) } {
puts "\nStarting FDT (bedpost) at [ exec date ]"
fsl:exec "cp -r $FEEDSDIR/data/fdt_subj1 $FEEDSDIR/results"
fsl:exec "unset FS..."
(file "./RUN" line 393)
Command exited with non-zero status 1
2096.14user 33.66system 35:38.20elapsed 99%CPU (0avgtext+0avgdata 3940352maxresident)k
279624inputs+1028696outputs (114major+18932532minor)pagefaults 0swaps
mahsa@mahsa-TA870:~/Desktop/feeds$ cd ..
mahsa@mahsa-TA870:~/Desktop$ cd..
cd..: command not found
mahsa@mahsa-TA870:~/Desktop$ cd ..
mahsa@mahsa-TA870:~$ sudo apt-get install fsl
[sudo] password for mahsa:
Reading package lists... Done
Building dependency tree
Reading state information... Done
fsl is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 650 not upgraded.
mahsa@mahsa-TA870:~$
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