Hi Remie,
PyMOL by default sorts atoms based on their identifiers (segment, chain, residue number). Could it be that your file has segment identifiers? Try this after loading your file:
PyMOL>alter all, segi=""
PyMOL>sort
Cheers,
Thomas
On 07 Aug 2014, at 19:08, CCP4BB automatic digest system <[log in to unmask]> wrote:
> Date: Thu, 7 Aug 2014 11:19:42 -0400
> From: Remie Fawaz-Touma <[log in to unmask]>
> Subject: Chains view
>
> Hi everyone,
>
> Does anyone know how to rearrange chains when looking at a structure in PyMol (maybe it has to be done in coot, don’t know).
>
> I have the ligand first now in PyMol and would like to see the sequence of the protein first, then ligand.
>
> It is worth mentioning that I did reorder the chains in coot: Extensions > Modelling > Reorder chains, and chain A is my protein, B is the ligand and C are the waters.
>
> So why don’t I see the same order in PyMol and how do I fix that?
>
> Thanks for any help,
>
> Remie
--
Thomas Holder
PyMOL Developer
Schrödinger, Inc.
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