JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for STARDEV Archives


STARDEV Archives

STARDEV Archives


STARDEV@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

STARDEV Home

STARDEV Home

STARDEV  July 2014

STARDEV July 2014

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: BUG: GAIA (Hikianalia release) cannot display/run on RHEL7/CentOS7

From:

Henry Stilmack <[log in to unmask]>

Reply-To:

Starlink development <[log in to unmask]>

Date:

Thu, 31 Jul 2014 10:23:19 -1000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (161 lines)

Executive summary: GAIA problem is known bug, build problems fixed.

On 07/31/2014 09:48 AM, Tim Jenness wrote:
> On Thu, Jul 31, 2014 at 12:33 PM, Henry Stilmack <[log in to unmask]
>> wrote:
> 
>> Beginning rollout of CentOS 7 here, but GAIA from the current release
>> fails (both on local machine and from remote session on any machine) with:
>>
>>
> So this is the CentOS 6 2014A release you are using? That works fine on a
> CentOS 6 system.
> 
Yes - well, I was using the installed /star here at JAC, which I think
is just Hikianalia. GAIA runs/displays remotely just fine on CentOS 5
and 6 - but not on 7.

UPDATE: Sarah Graves pointed me to a RHEL bug report
https://bugzilla.redhat.com/show_bug.cgi?id=1043686
regarding Tk apps failing - seems by default KDE tries to apply its
colour settings to non-KDE apps. If you turn that off, GAIA now works.
Sorry for the bother.
> 
>>
>> Attempted to rebuild Starlink from GIT checkout, but that fails when
>> linking SST:
>>
>> /export/data/hps/star-hikianalia/lib/libstarutil.so: undefined reference
>> to `strlcpy'
>> /export/data/hps/star-hikianalia/lib/libstarutil.so: undefined reference
>> to `strlcat'
>> collect2: error: ld returned 1 exit status
>> make[2]: *** [sst_mon] Error 1
>> make[1]: *** [all] Error 2
>>
>>
> That's a bit weird. starutil runs a configure test to see if
> strlcpy/strlcat is present and if not provides its own copies. Linux
> doesn't support strlcpy so I wonder what has gone wrong here.
> 
> Can you send me the output of ./configure run in the libraries/starutil
> directory?
> 
pupule: [~/data/hps/star-hikianalia/libraries/starutil] $ ./configure
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
configure: Starlink tree located at /export/data/hps/star-hikianalia
checking for git... /bin/git
checking for pax... /bin/pax
checking for gnutar... no
checking for tar... /bin/tar
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /bin/ld
checking if the linker (/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B
checking the name lister (/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to
x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain
format... func_convert_file_noop
checking for /bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ANSI C header files... (cached) yes
checking for strlcpy... no
checking for strlcat... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating component.xml
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands




> Are you configure with the LDFLAGS=-Wl,--no-as-needed option? That's
> probably needed on CentOS 7.
> 

Building in /export/data/hps/starlink-hikianalia
export STARCONF_DEFAULT_PREFIX=/export/data/hps/star-hikianalia
export F77=g95
export FC=g95
export STARCONF_DEFAULT_STARLINK=$STARCONF_DEFAULT_PREFIX
export STARLINK=$STARCONF_DEFAULT_PREFIX
export STARLINK_DIR=$STARCONF_DEFAULT_PREFIX
export PATH=$STARLINK/buildsupport/bin:$STARLINK/bin:$PATH
export LD_LIBRARY_PATH=$STARCONF_DEFAULT_STARLINK/lib:${LD_LIBRARY_PATH}
./configure -C LDFLAGS=-Wl,--no-as-needed

...
Looks like it's building correctly - at least, got past SST this time.
Thanks!

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

December 2023
January 2023
December 2022
July 2022
June 2022
April 2022
March 2022
December 2021
October 2021
July 2021
April 2021
January 2021
October 2020
September 2020
August 2020
May 2020
November 2019
October 2019
July 2019
June 2019
February 2019
January 2019
December 2018
November 2018
August 2018
July 2018
May 2018
April 2018
March 2018
February 2018
December 2017
October 2017
August 2017
July 2017
May 2017
April 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
October 2015
September 2015
August 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
December 2006
November 2006
October 2006
September 2006
August 2006
July 2006
June 2006
May 2006
April 2006
March 2006
February 2006
January 2006
December 2005
November 2005
October 2005
September 2005
August 2005
July 2005
June 2005
May 2005
April 2005
March 2005
February 2005
January 2005
December 2004
November 2004
October 2004
September 2004
August 2004
July 2004
June 2004
May 2004
April 2004
March 2004
February 2004
January 2004
2004
April 2003
2003


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager