Not that it should matter (much) but are your input images all oriented
the same way? If you run fslhd, do they all have the same q-form/s-form
orientation? If not, can you reorient them all to the same (e..g "RPI")
orientation with fslswapdim/fslorient? Input orientation seems to be
the issue on a lot of the mailing list questions. Just a guess though.
On 07/14/2014 04:45 PM, Thiago Junqueira Ribeiro de Rezende wrote:
> Hi Everybody!
>
> Thanks for the suggestions.
> However, once more, the problem with inconsistent orientations was not solved.
> I think that the problem is about the reference images or some specification in images from Philips' scanners. But, when I make the registration in VBM, the same way and the same images, the resultant images show up registered.
> What do you think?
>
> All the best
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