Hi FSL Community,
In order to register a mask to FA map I did FLIRT but the overlap between the mask and the FA map was not very good so I am thinking to do FNIRT using the following command line:
fnirt --ref=<Path to my FA map> --in = <path to my mask> --iout=<output>
My question is what is the additional preferred flags that I should add to my command line to do an effective registration
I highly appreciate any advice
thanks,
mohamad
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