CIF != STAR
CIF is a type of STAR file. Many CIF parsers out there will only deal with CIF, not generic STAR files. I don't know about the one you mentioned specifically, but many do not provide generic STAR functionality (not that STAR itself is very complex).
----------------------------------------------------------------------------
Steven Ludtke, Ph.D.
Professor, Dept. of Biochemistry and Mol. Biol. Those who do
Co-Director National Center For Macromolecular Imaging ARE
Baylor College of Medicine The converse
[log in to unmask] -or- [log in to unmask] also applies
http://ncmi.bcm.edu/~stevel
On Jul 31, 2014, at 6:00 PM, jwwang <[log in to unmask]> wrote:
> Actually, STAR format is the CIF format. You will find lots of python-based CIF processing softwares. e.g. iotbx.cif in the PHENIX package.
>
> http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236671/
> "iotbx.cif: a comprehensive CIF toolbox"
>
>> -----Original Messages-----
>> From: "Sean Connell" <[log in to unmask]>
>> Sent Time: Thursday, July 31, 2014
>> To: [log in to unmask]
>> Cc:
>> Subject: [ccpem] python parser for star files?
>>
>> Dear all. I was wondering if anyone knows of an existing python package that can be used to easily parse the star files from relion? Many thanks in advance.
>>
>> sean
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> This e-mail comes from CIC bioGUNE. The e-mail and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. Any unauthorised dissemination or copying of this e-mail or its attachments, and any use or disclosure of any information contained in them, is strictly prohibited and may be illegal. If you have received this e-mail in error, please notify or telephone + 34 944 06 13 00 and delete it from your system.
>>
>> Please consider the environment before printing this email
|