Hi - sounds like it could be memory (RAM) related. How many subjects
do you have in all? What's the total memory on the system (you can
check with the following command on a Linux system: head -n1
/proc/meminfo)?
On Fri, Jun 6, 2014 at 2:27 PM, elisa veronese <[log in to unmask]> wrote:
> Dear FSL users,
> I have a problem with my TBSS pipeline: after calling the tbss_1_preproc,
> tbss_2_reg -T, tbss_3_postreg -S, the calling of tbss_4_prestats 0.2 does
> not produce any all_FA_skeletonised file. The error message I obtain is the
> following:
>
>
> creating skeleton mask using threshold 0.2
> creating skeleton distancemap (for use in projection search)
> projecting all FA data onto skeleton
> /usr/local/fsl/bin/tbss_4_prestats: line 99: 9038 Killed
> ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst
> ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_FA_skeletonised
>
> now run stats - for example:
> randomise -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d
> design.mat -t design.con -n 500 --T2 -V
>
> Can anybody tell me the reason why it does not work?
> Thank you.
>
> Best,
> Elisa
> --
> Elisa Veronese - PhD
>
> Research Unit on Brain Imaging and Neuropsychology (RUBIN)
> Inter-University Center for Behavioral Neurosciences (ICBN)
> University of Udine and University of Verona, Italy
> ICBN Website: http://icbn.uniud.it/tiki-index.php
>
>
--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
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