Hi,
Are you using version 5 of FSL (which we recommend)?
If so, then you do not need to run surface_fdr, but you should be using randomise on the volumetric outputs from the new style of vertex analysis. See the wiki documentation for details on this and also the new FSL Course material.
All the best,
Mark
On 18 Jun 2014, at 11:53, Vera Gramigna <[log in to unmask]> wrote:
> -------------------------- Messaggio originale ---------------------------
> Oggetto: surface _fdr error
> Da: [log in to unmask]
> Data: Mer, 18 Giugno 2014 12:47 pm
> A: [log in to unmask]
> --------------------------------------------------------------------------
>
> Good morning,
>
> I'm trying to do a surface vertex analysis, but I found an error.
>
> I ran script : surface_fdr Left.vtk
>
> And error message :
>
> open file Left_pvals.vtk to save.
> succesfully opened file Left_pvals.vtk to save.
> FDR threshold is 0.0067516
> terminate called after throwing an instance of 'NEWMAT::IndexException'
> /usr/local/fsl/bin/surface_fdr: line 110: 8998 Abortito
> (core dumped) $FSLDIR/bin/run_mesh_utils -m ${infile}.vtk -i
> ${infile}_Fthresh -o ${infile}_Fthresh.vtk --doVolumeToScalars
>
>
> Also, in addition to error message, only output files (_pvals.vtk)is
> generated but not _Fthresh.vtk)
>
> I can't figure out cause of problem..
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