Hi,
There is no "correct" answer to these questions. The different atlases contain different structures and were created in different ways (and therefore have different limitations). For information about the atlases see:
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases
All the best,
Mark
On 20 Jun 2014, at 03:10, SUBSCRIBE FSL Xinfa_Shi <[log in to unmask]> wrote:
> Dear experts ,
> I followed the user guide of TBSS and finished statistic analysis . I have the following question to report brain region using white matter atlases .
> 1. Which one of white matter atlases should I use in Atlasquery tool ? Different atlas has different result ,as followed :
> shixinfa@shixinfa:~$ atlasquery -a "JHU ICBM-DTI-81 White-Matter Labels" -c -18,-53,23
> <b>JHU ICBM-DTI-81 White-Matter Labels</b><br>Splenium of corpus callosum
> shixinfa@shixinfa:~$ atlasquery -a "JHU White-Matter Tractography Atlas" -c -18,-53,23
> <b>JHU White-Matter Tractography Atlas</b><br>3% Forceps major
> 2. Which one of white matter atlases should I use in the FSLView ,because Atlases folder has many atlases,such as JHU-ICBM-DWI-1mm ,JHU-ICBM-FA-1mm, JHU-ICBM-T2-1mm ,JHU-ICBM-tracts-maxprob-thr0-1mm ,JHU-ICBM-tracts-prob--1mm, JHU-ICBM-WhiteMatter-labels-2mm , JHU-WhiteMatter-labels-1mm.
> What do they mean ?
> What are ICBM-DTI-81 white-matter labels atlas and JHU white-matter tractography atlas ?
> Best regards .
>
> Shi Xin-Fa .
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