Hi,
I'm not sure what you mean by "not yet register" but "bring it in the same orientation", since registration brings things into the same orientation. So what I recommend is that you perform the registrations, as this should achieve what you want.
All the best,
Mark
On 9 May 2014, at 14:11, Carola Eleni Hering <[log in to unmask]> wrote:
> Yes the labels are correct. I do not yet register the image to the EPI but ony want to bring it in the same orientation, the head is tilted with 30 degrees, but the EPIs are not.
> Hope this clarifies it.
>
> Thank you
>
>
> Am 09.05.2014 um 14:51 schrieb Niels Bergsland <[log in to unmask]>:
>
>> What do you mean that it's not working - that the registration itself
>> is bad or that it's erroring out?
>>
>> How do the labels look in fslview? Are those correct, with respect to
>> the patient anatomy?
>>
>> On Fri, May 9, 2014 at 12:39 PM, Carola Eleni Hering
>> <[log in to unmask]> wrote:
>>> Hi Michel,
>>>
>>> thank you for your fast response. I tried this, but this is not working….
>>> I used as reference image MNI T1 template, for input, my structural wrongly orientated image and then pressed GO.
>>>
>>> Do you have an idea why this did not work?
>>>
>>> Thanks a lot,
>>> Carola
>>>
>>>
>>> Am 08.05.2014 um 17:44 schrieb Michel Thiebaut de Schotten <[log in to unmask]>:
>>>
>>>> Hi Carola,
>>>>
>>>> Why don't you try a simple flirt of your T1 on the average of your movement corrected EPI.
>>>> Cheers,
>>>>
>>>> Michel
>>>>
>>>> Sent from my iPhone
>>>>
>>>>> On 8 May 2014, at 16:22, Carola <[log in to unmask]> wrote:
>>>>>
>>>>> Hi guys,
>>>>>
>>>>> I would like to manually reorientate my T1 structural non-brain extracted images for each participant. How is this possible in FSL or even FSL view?
>>>>>
>>>>> At the moment the whole head (structural image) is tilted 30° to the front (pitch) but all my EPI images are in the right orientation. I need this for the non-linear registration.
>>>>>
>>>>> Could anyone tell me how I can easily reorientate all of the T1 images in the same orientation as the functional ones?
>>>>> In SPM it is called: Reorientate current image. Where do I find the same manual reorientation option in FSL?
>>>>>
>>>>> Thanks a lot,
>>>>> Carola
>>
>>
>>
>> --
>> Niels Bergsland
>> Integration Director
>> Buffalo Neuroimaging Analysis Center
>> 100 High St. Buffalo NY 14203
>> [log in to unmask]
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