You should use the -g option so that the grad_dev.nii.gz file gets taken
into account (the effects of gradient nonlinearities on the bvecs and
bvals). Also you should ask for -n 3 fibers.
Peace,
Matt.
On 5/20/14, 7:57 AM, "Nele De Witte" <[log in to unmask]> wrote:
>Dear experts,
>
>I have a question regarding anlysis of the multi-shell human connectome
>data. When running bedpostx (from the command line), I have to state the
>following, right?
>
>bedpostx <subject directory> --model=2
>
>Apart from making sure bedpostx uses a multi-shell model, do I have to
>change any other setting from the bedpostx or probtrackx commands?
>
>Thanks for the info!
>
>Sincere regards,
>Nele
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