Hi Michel,
thank you for your fast response. I tried this, but this is not working….
I used as reference image MNI T1 template, for input, my structural wrongly orientated image and then pressed GO.
Do you have an idea why this did not work?
Thanks a lot,
Carola
Am 08.05.2014 um 17:44 schrieb Michel Thiebaut de Schotten <[log in to unmask]>:
> Hi Carola,
>
> Why don't you try a simple flirt of your T1 on the average of your movement corrected EPI.
> Cheers,
>
> Michel
>
> Sent from my iPhone
>
>> On 8 May 2014, at 16:22, Carola <[log in to unmask]> wrote:
>>
>> Hi guys,
>>
>> I would like to manually reorientate my T1 structural non-brain extracted images for each participant. How is this possible in FSL or even FSL view?
>>
>> At the moment the whole head (structural image) is tilted 30° to the front (pitch) but all my EPI images are in the right orientation. I need this for the non-linear registration.
>>
>> Could anyone tell me how I can easily reorientate all of the T1 images in the same orientation as the functional ones?
>> In SPM it is called: Reorientate current image. Where do I find the same manual reorientation option in FSL?
>>
>> Thanks a lot,
>> Carola
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