Dear Airlie and Randy
Thank you! I have seen this error for quite some time and get it around by
using ccp4-6.3 for Phaser. Will try to be the first to report next time :-)
All the best
Jie
----- Original Message -----
From: "Airlie McCoy" <[log in to unmask]>
To: "jie liu" <[log in to unmask]>
Cc: <[log in to unmask]>
Sent: Tuesday, May 20, 2014 12:08 PM
Subject: Re: [ccp4bb] odd phaser failure
> Dear Eleanor and Jie,
> I replied to Eleanor off-list to say that I can credit Isabel Uson with
> being the first to report this bug. The bug has been corrected for the
> recent phenix release. The phenix and ccp4 releases of phaser will be
> synchronised with the next ccp4 update, which is imminent.
>
> Some ccp4bb-ers may not know that we have a reward for the first person to
> report any given bug. But you only get to find out what it is if you
> report a bug and also promise not to tell anyone what it is :-)
>
> Airlie
> On May 20 2014, jie liu wrote:
>
>>Dear Eleanor
>>
>> I've been getting this error for a while. Switching back to ccp4-6.3
>> would solve the problem. I guess it's a bug of version 6.4.
>>
>>Best
>>
>>Jie
>> ----- Original Message -----
>> From: Eleanor Dodson To: [log in to unmask] Sent: Tuesday, May 20,
>> 2014 5:26 AM
>> Subject: [ccp4bb] odd phaser failure
>>
>>
>> I should be sending thids to the phaser team I guess, but maybe there is
>> an easy fix..
>>
>> This is the end of the log file..
>> Sg I222 or I212121
>>
>>
>> Scoring 500 randomly sampled orientations and translations
>> Spreading calculation onto 2 threads.
>> Generating Statistics for TF SET #1 of 2
>> 0% 100%
>> |===============================================================|
>> DONE
>>
>> Mean Score (Sigma): -18.84 (17.72)
>>
>>
>> SET #1 of 2 TRIAL #1 of 245
>> ---------------------------
>> Search Euler = 99.1 82.9 249.8, Ensemble = ensemble1
>>
>> Doing Fast Translation Function FFT...
>> Done
>>
>> Helix is perpendicular to two-fold: point exclusions applied
>>
>> <B><FONT COLOR="#FF8800">
>> $TEXT:Warning: $$ Baubles Markup $$
>> -------------------------------------------------------------------------------------
>> UNHANDLED ERROR: cctbx Error: site_symmetry: min_distance_sym_equiv too
>> large.
>> -------------------------------------------------------------------------------------
>> $$
>>
>>
>> --------------------
>> EXIT STATUS: FAILURE
>> --------------------
>>
>> CPU Time: 0 days 0 hrs 0 mins 28.27 secs ( 28.27 secs)
>> Finished: Mon May 19 11:44:52 2014
>>
>> </pre>
>>
>
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