Dear Antony,
Have you try to use the option - parralel 1, to see what hapen. Maybe it's problem with the parallelism option. If you try this option you force to use only one core and i think you decrease your need in memory. If this solution help, you probably have to check the xdsInput parameters controled by xia2 if it's possible (i have not try at this time) .
Hope to help.
Nicolas
________________________________________
De : CCP4 bulletin board [[log in to unmask]] de la part de Antony Oliver [[log in to unmask]]
Envoyé : lundi 19 mai 2014 14:37
À : [log in to unmask]
Objet : [ccp4bb] Xia2 / XDS issues
Dear CCP4-ers.
I am (trying) to use Xia2 (svn/Build 4599) to process some diffraction data.
However, I am coming across the following issue, which I don’t seem to be able to solve...
-------------------- Integrating SWEEP1 --------------------
Status: error "[XDS] cannot allocate memory”
I have checked XDS, and I have the correct (64-bit version installed: VERSION January 10, 2014 BUILT=20140307).
I also have set the parameter KMP_STACKSIZE to 8m, in my .bash_profile as indicated in the XDS setup instructions.
I am running OS X Mavericks (10.9.3) / XQuartz 2.7.6.
I also have 16 GB of RAM installed.
Any help / suggestions would be very much appreciated.
Tony.
- - - - - - - - - - - - - - - - - -
Dr Antony W Oliver
Senior Research Fellow
CR-UK DNA Repair Enzymes Group
Genome Damage and Stability Centre
Science Park Road
University of Sussex
Falmer, Brighton, BN1 9RQ
- - - - - - - - - - - - - - - - - -
email: [log in to unmask]
tel (office): +44 (0)1273 678349
tel (lab): +44 (0)1273 677512
http://www.sussex.ac.uk/lifesci/oliverlab
http://tinyurl.com/aw-oliver
- - - - - - - - - - - - - - - - - -
|