Super! Works perfect!
Thanks!
Heidi
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Dr. Heidi Jacobs
Postdoc researcher
Faculty of Health, Medicine and Life Sciences
School for Mental Health and Neurosciences
Division Cognitive Neuropsychiatry and Clinical Neurosciences
Alzheimer Center Limburg
[log in to unmask]
www.maastrichtuniversity.nl
www.heidijacobs.nl
Dr. Tanslaan 12, 6229 ET Maastricht
P.O. Box 616, 6200 MD Maastricht, The Netherlands
T +31 43 38 84 090 F +31 43 38 84 092
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Van: FSL - FMRIB's Software Library [[log in to unmask]] namens Niels Bergsland [[log in to unmask]]
Verzonden: woensdag 28 mei 2014 16:27
Aan: [log in to unmask]
Onderwerp: Re: [FSL] skipping BET in SIENAX
Hi - you can use the attached sienax script where I added a -P option, taking the brain and the skull as options. This will bypass the brain extraction.
On Wed, May 28, 2014 at 3:45 PM, Jacobs H (NP) <[log in to unmask]<mailto:[log in to unmask]>> wrote:
Hi!!
Is there a way to skip BET in SIENAX. We have improved BET manually, as we had problems with several cases.
Can I now run SIENAX with these BET images?
I only need it to get the scaling factor.
Thanks!
Heidi
================================================
Dr. Heidi Jacobs
Postdoc researcher
Faculty of Health, Medicine and Life Sciences
School for Mental Health and Neurosciences
Division Cognitive Neuropsychiatry and Clinical Neurosciences
Alzheimer Center Limburg
[log in to unmask]<mailto:[log in to unmask]>
www.maastrichtuniversity.nl<http://www.maastrichtuniversity.nl>
www.heidijacobs.nl<http://www.heidijacobs.nl>
Dr. Tanslaan 12, 6229 ET Maastricht
P.O. Box 616, 6200 MD Maastricht, The Netherlands
T +31 43 38 84 090<tel:%2B31%2043%2038%2084%20090> F +31 43 38 84 092<tel:%2B31%2043%2038%2084%20092>
================================================
--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
[log in to unmask]<mailto:[log in to unmask]>
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