Dear all,
I'm stuck doing the nonFA_skeletonised file
I did this:
“fsl5.0-tbss_skeleton -i <input image> -p <skeleton_threshold> <distance map> <search_rule_mask> <original 4D_data> <porjected_4D data name> -a <alternative_4D data> [-s <alternative_skeleton>]”
fsl5.0-tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA mean_FA all_MD_skeletonised -a all_MD
Adding all_MD_skeletonised to change the name to the new skeletonised file, it's the same?
And what's the role of the threshold? because I change the value and the output file is the same.
Thanks in advance
Regards,
Manuel Blesa
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