Dear all,
I run tbss_non_FA but the results are very strange, I have taken a look in the script to try to know how it works an try to replicate the steps one by one. In the step of registration:
applywarp -i ../${ALTIM}/$f -o ${f}_to_target_${ALTIM} -r $FSLDIR/data/standard/FMRIB58_FA_1mm -w ${f}_FA_to_${best}_warp $postaffine
I understand that the input is our image (MD, RD, etc..), the template and the mask ok, but the problem is with the applied warp, this warp corresponds to the FA registration of each subject? I do this and the results are still so strange.
Somebody can help me?
Regards,
Manuel Blesa
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