Dear Maria,
This command will be fine for calculating the mean FA over the entire skeleton.
If you want to just get the mean FA from within a particular anatomical region or statistically significant region then you need to change the mask.
All the best,
Mark
On 19 May 2014, at 18:06, Maria <[log in to unmask]> wrote:
> Dear experts,
>
> I“m trying to calculate the mean FA after running TBSS.
>
> which would be the comand?
>
> is this a correct way?: "fslmeants -i all_FA_skeletonised.nii.gz -m mean_FA_skeleton_mask.nii.gz -o FAmedia"
>
> Thanks in advance,
>
>
> Marķa.
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