Dne 14.5.2014 16:16, Matt Glasser napsal(a):
> I have not noticed this on Ubuntu 12.04. Do all the other FSL tools work?
> Do you have the auxiliary FSL packages installed (like the FSL atlases)?
>
> Peace,
>
> Matt.
>
> On 5/14/14, 8:31 AM, "Matyá¹" <[log in to unmask]> wrote:
>
>> Hi,
>>
>> There is no error message from fslreorient2std, but there is no output
>> either (I tried to call it alone like this: fslreorient2std T1.nii - and
>> there was no output to terminal). The thing with convert_xfm is that in
>> fsl_anat script it first run fslreorient2std, this should provide
>> T1_std2orig.mat (or I think it should), and this is input for
>> convert_xfm in the fsl_anat pipeline (convert_xfm -omat T1_std2orig.mat
>> -inverse T1_orig2std.mat) - and this ends with "Cannot read
>> input-matrix" error.
>>
>> I installed it with Neurodebian as you said, but I has version 4.1. also
>> installed on my PC, so maybe this could do some problems.
>>
>>
>>
>>
>> Dne 14.5.2014 15:17, Mark Jenkinson napsal(a):
>>> Hi,
>>>
>>> I have not heard of this before, and it is very concerning.
>>> How does the convert_xfm error relate to fslreorient2std (as the latter
>>> does not call convert_xfm)?
>>>
>>> If you just run fslreorient2std on its own, do you get an error message?
>>>
>>> And did you install FSL via NeuroDebian, or some other way?
>>>
>>> All the best,
>>> Mark
>>>
>>>
>>>
>>> On 14 May 2014, at 15:02, Matyá¹ <[log in to unmask]> wrote:
>>>
>>>> Hi all,
>>>>
>>>> I want to ask if anyone has experienced that fslreorient2std doesn't
>>>> provide any output in Ubuntu 12.04 or above (I'm using fsl 5.0.6). I
>>>> wanted to try fsl_anat script for my structural data, but in first step
>>>> of this script it exits with error message that convert_xfm could not
>>>> read T1_std2orig.mat and after while I found out that this is problem
>>>> of fslreorient2std. It does the same on my laptop with Ubuntu 14.04.
>>>> Any idea why this is happening?
>>>>
>>>> Thank you,
>>>>
>>>> Matyas
Hi,
Yes, I have all these packages installed. All other functions I tried
worked just fine.
|