Hi,
I have not heard of this before, and it is very concerning.
How does the convert_xfm error relate to fslreorient2std (as the latter does not call convert_xfm)?
If you just run fslreorient2std on its own, do you get an error message?
And did you install FSL via NeuroDebian, or some other way?
All the best,
Mark
On 14 May 2014, at 15:02, Matyá¹ <[log in to unmask]> wrote:
> Hi all,
>
> I want to ask if anyone has experienced that fslreorient2std doesn't provide any output in Ubuntu 12.04 or above (I'm using fsl 5.0.6). I wanted to try fsl_anat script for my structural data, but in first step of this script it exits with error message that convert_xfm could not read T1_std2orig.mat and after while I found out that this is problem of fslreorient2std. It does the same on my laptop with Ubuntu 14.04. Any idea why this is happening?
>
> Thank you,
>
> Matyas
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