Hi All,
When I use epi_reg with mean epi image, t1, and t1 brain extracted I keep getting errors. The brain is shifted out of its bounding box or it is tilted in some strange direction. It's really obvious in the picture here:
https://drive.google.com/file/d/0B1ucsV24QGoUWkJxbk1oZllPT2c/edit?usp=sharing
I'm not sure what I'm doing wrong. The same process without bbr works fine.
Thanks,
Tom
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