What kind of EPI is that, there seems to be very little grey/white
contrast (which is what BBR in epi_reg uses for alignment).
Peace,
Matt.
On 5/8/14, 12:23 PM, "Thomas Nickson" <[log in to unmask]> wrote:
>Hi All,
>
>When I use epi_reg with mean epi image, t1, and t1 brain extracted I keep
>getting errors. The brain is shifted out of its bounding box or it is
>tilted in some strange direction. It's really obvious in the picture here:
>
>https://drive.google.com/file/d/0B1ucsV24QGoUWkJxbk1oZllPT2c/edit?usp=shar
>ing
>
>I'm not sure what I'm doing wrong. The same process without bbr works
>fine.
>
>Thanks,
>
>Tom
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