Hi All,
I tried to compile relion1.2 using : sudo ./INSTALL.sh -j 8
However I got a large list of errors, please see below, I will appreciate any help:
sudo ./INSTALL.sh -j 8
-e Compiling fftw-3.2.2 ...
-e See /home/sb/Programs/relion-1.2/external/fftw_build.log for details
/tmp/ccoSfO1q.s: Assembler messages:
/tmp/ccoSfO1q.s:114: Error: no such instruction: `vfnmadd312sd -24(%rsp),%xmm1,%xmm3'
/tmp/ccXqq9Jq.s: Assembler messages:
/tmp/ccXqq9Jq.s:138: Error: no such instruction: `vfnmadd312sd -64(%rsp),%xmm0,%xmm6'
/tmp/ccXqq9Jq.s:145: Error: no such instruction: `vfmadd312sd -64(%rsp),%xmm0,%xmm8'
/tmp/ccXqq9Jq.s:146: Error: no such instruction: `vfmadd312sd -48(%rsp),%xmm0,%xmm7'
/tmp/ccXqq9Jq.s:159: Error: no such instruction: `vfnmadd312sd -48(%rsp),%xmm0,%xmm9'
make[5]: *** [n1_6.lo] Error 1
make[5]: *** Waiting for unfinished jobs....
make[5]: *** [n1_9.lo] Error 1
/tmp/ccriazCq.s: Assembler messages:
/tmp/ccriazCq.s:125: Error: no such instruction: `vfmadd312sd -24(%rsp),%xmm0,%xmm8'
/tmp/ccriazCq.s:157: Error: no such instruction: `vfmadd312sd -8(%rsp),%xmm0,%xmm7'
/tmp/ccriazCq.s:159: Error: no such instruction: `vfmadd312sd -40(%rsp),%xmm0,%xmm6'
/tmp/ccriazCq.s:164: Error: no such instruction: `vfmadd312sd -104(%rsp),%xmm0,%xmm13'
/tmp/ccriazCq.s:165: Error: no such instruction: `vfmadd312sd -88(%rsp),%xmm0,%xmm10'
/tmp/ccriazCq.s:166: Error: no such instruction: `vfmadd312sd -56(%rsp),%xmm0,%xmm7'
/tmp/ccriazCq.s:175: Error: no such instruction: `vfnmadd312sd -72(%rsp),%xmm0,%xmm2'
/tmp/ccriazCq.s:179: Error: no such instruction: `vfnmadd312sd -8(%rsp),%xmm0,%xmm4'
/tmp/ccriazCq.s:182: Error: no such instruction: `vfnmadd312sd -104(%rsp),%xmm0,%xmm10'
/tmp/ccriazCq.s:189: Error: no such instruction: `vfnmadd312sd -88(%rsp),%xmm0,%xmm8'
/tmp/ccriazCq.s:194: Error: no such instruction: `vfnmadd312sd -24(%rsp),%xmm0,%xmm6'
/tmp/ccriazCq.s:203: Error: no such instruction: `vfnmadd312sd -40(%rsp),%xmm0,%xmm2'
/tmp/ccriazCq.s:207: Error: no such instruction: `vfnmadd312sd -56(%rsp),%xmm0,%xmm4'
make[5]: *** [n1_12.lo] Error 1
/tmp/cckBvqGp.s: Assembler messages:
/tmp/cckBvqGp.s:144: Error: no such instruction: `vfnmadd312sd -96(%rsp),%xmm3,%xmm15'
/tmp/cckBvqGp.s:151: Error: no such instruction: `vfnmadd312sd -112(%rsp),%xmm3,%xmm5'
/tmp/cckBvqGp.s:183: Error: no such instruction: `vfnmadd312sd -88(%rsp),%xmm3,%xmm13'
/tmp/cckBvqGp.s:185: Error: no such instruction: `vfnmadd312sd -104(%rsp),%xmm3,%xmm6'
make[5]: *** [n1_10.lo] Error 1
/tmp/ccU3u4Rp.s: Assembler messages:
/tmp/ccU3u4Rp.s:219: Error: no such instruction: `vfmadd312sd -112(%rsp),%xmm2,%xmm14'
/tmp/ccU3u4Rp.s:239: Error: no such instruction: `vfmadd312sd -112(%rsp),%xmm2,%xmm8'
/tmp/ccU3u4Rp.s:254: Error: no such instruction: `vfmadd312sd -104(%rsp),%xmm2,%xmm8'
/tmp/ccU3u4Rp.s:262: Error: no such instruction: `vfmadd312sd -120(%rsp),%xmm2,%xmm8'
/tmp/ccU3u4Rp.s:273: Error: no such instruction: `vfmadd312sd -104(%rsp),%xmm2,%xmm8'
/tmp/ccU3u4Rp.s:286: Error: no such instruction: `vfmadd312sd -104(%rsp),%xmm2,%xmm6'
/tmp/ccU3u4Rp.s:292: Error: no such instruction: `vfmadd312sd -120(%rsp),%xmm2,%xmm8'
/tmp/ccU3u4Rp.s:316: Error: no such instruction: `vfmadd312sd -120(%rsp),%xmm2,%xmm7'
make[5]: *** [n1_14.lo] Error 1
/tmp/ccEjj8Ap.s: Assembler messages:
/tmp/ccEjj8Ap.s:258: Error: no such instruction: `vfnmadd312sd -104(%rsp),%xmm0,%xmm8'
/tmp/ccEjj8Ap.s:264: Error: no such instruction: `vfmadd312sd -80(%rsp),%xmm0,%xmm11'
/tmp/ccEjj8Ap.s:307: Error: no such instruction: `vfmadd312sd -88(%rsp),%xmm0,%xmm12'
/tmp/ccEjj8Ap.s:309: Error: no such instruction: `vfnmadd312sd -96(%rsp),%xmm0,%xmm5'
make[5]: *** [n1_16.lo] Error 1
/tmp/ccRAFoQq.s: Assembler messages:
/tmp/ccRAFoQq.s:185: Error: no such instruction: `vfnmadd312sd -72(%rsp),%xmm1,%xmm3'
/tmp/ccRAFoQq.s:264: Error: no such instruction: `vfnmadd312sd -104(%rsp),%xmm14,%xmm15'
/tmp/ccRAFoQq.s:361: Error: no such instruction: `vfnmadd312sd -40(%rsp),%xmm7,%xmm12'
/tmp/ccRAFoQq.s:388: Error: no such instruction: `vfnmadd312sd -104(%rsp),%xmm14,%xmm13'
/tmp/ccRAFoQq.s:410: Error: no such instruction: `vfmadd312sd -104(%rsp),%xmm2,%xmm4'
make[5]: *** [n1_13.lo] Error 1
/tmp/cc6MQfBq.s: Assembler messages:
/tmp/cc6MQfBq.s:122: Error: no such instruction: `vfnmadd312sd -120(%rsp),%xmm0,%xmm13'
/tmp/cc6MQfBq.s:130: Error: no such instruction: `vfmadd312sd -96(%rsp),%xmm0,%xmm5'
/tmp/cc6MQfBq.s:140: Error: no such instruction: `vfmadd312sd -104(%rsp),%xmm0,%xmm7'
/tmp/cc6MQfBq.s:144: Error: no such instruction: `vfmadd312sd -120(%rsp),%xmm0,%xmm6'
/tmp/cc6MQfBq.s:202: Error: no such instruction: `vfnmadd312sd 80(%rsp),%xmm0,%xmm13'
/tmp/cc6MQfBq.s:218: Error: no such instruction: `vfmadd312sd -80(%rsp),%xmm0,%xmm7'
/tmp/cc6MQfBq.s:227: Error: no such instruction: `vfmadd312sd 96(%rsp),%xmm0,%xmm5'
/tmp/cc6MQfBq.s:231: Error: no such instruction: `vfmadd312sd 80(%rsp),%xmm0,%xmm9'
/tmp/cc6MQfBq.s:241: Error: no such instruction: `vfnmadd312sd -72(%rsp),%xmm12,%xmm13'
/tmp/cc6MQfBq.s:266: Error: no such instruction: `vfnmadd312sd -64(%rsp),%xmm12,%xmm8'
/tmp/cc6MQfBq.s:298: Error: no such instruction: `vfnmadd312sd -56(%rsp),%xmm12,%xmm8'
/tmp/cc6MQfBq.s:324: Error: no such instruction: `vfnmadd312sd -32(%rsp),%xmm14,%xmm10'
/tmp/cc6MQfBq.s:356: Error: no such instruction: `vfnmadd312sd -40(%rsp),%xmm11,%xmm8'
/tmp/cc6MQfBq.s:378: Error: no such instruction: `vfnmadd312sd -48(%rsp),%xmm6,%xmm8'
make[5]: *** [n1_15.lo] Error 1
make[4]: *** [all] Error 2
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
/tmp/ccvMjbTC.s: Assembler messages:
/tmp/ccvMjbTC.s:114: Error: no such instruction: `vfnmadd312sd -24(%rsp),%xmm1,%xmm3'
make[4]: *** [n1_6.lo] Error 1
make[3]: *** [install] Error 2
make[2]: *** [install-recursive] Error 1
make[1]: *** [install-recursive] Error 1
make: *** [install-recursive] Error 1
-e Compiling fltk-1.3.0 ...
-e See /home/sb/Programs/relion-1.2/external/fltk_build.log for details
configure: WARNING: Ignoring libraries " -lSM -lICE" requested by configure.
-e Compiling relion ...
-e See /home/sb/Programs/relion-1.2/relion_build.log for details
-e Compiling relion GUI ...
g++ -I/home/sb/Programs/relion-1.2/include -I/usr/include/freetype2 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -o 'gui' 'gui.cpp' /home/sb/Programs/relion-1.2/lib/libfltk.a -lXext -lXft -lfontconfig -lpthread -ldl -lm -lX11
In file included from mainwindow.h:365:0,
from gui.cpp:23:
mainwindow.cpp: In member function ‘void RelionMainWindow::setupPreprocess()’:
mainwindow.cpp:239:20: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
In file included from mainwindow.h:365:0,
from gui.cpp:23:
mainwindow.cpp: In member function ‘void RelionMainWindow::setup(int, bool)’:
mainwindow.cpp:792:21: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
mainwindow.cpp:805:21: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
mainwindow.cpp:816:20: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
Done!
-------------------------------------------------------------
Cheers
Samir Benlekbir, Research Fellow
Rubinstein Lab, Molecular Structure and Function Program
The Hospital for Sick Children
555 University Avenue, Rm. 3330
Toronto, ON
Canada
M5G 1X8
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