Hi Carola,
Why don't you try a simple flirt of your T1 on the average of your movement corrected EPI.
Cheers,
Michel
Sent from my iPhone
> On 8 May 2014, at 16:22, Carola <[log in to unmask]> wrote:
>
> Hi guys,
>
> I would like to manually reorientate my T1 structural non-brain extracted images for each participant. How is this possible in FSL or even FSL view?
>
> At the moment the whole head (structural image) is tilted 30° to the front (pitch) but all my EPI images are in the right orientation. I need this for the non-linear registration.
>
> Could anyone tell me how I can easily reorientate all of the T1 images in the same orientation as the functional ones?
> In SPM it is called: Reorientate current image. Where do I find the same manual reorientation option in FSL?
>
> Thanks a lot,
> Carola
|