Hi list,
please help me to resolve this issue.
Thanks,
Stefano
/usr/local/fsl/bin/probtrackx2
-s $SUBJECTS_DIR/DTI.bedpostX/merged
-m $SUBJECTS_DIR/DTI.bedpostX/nodif_brain_mask
-x $SUBJECTS_DIR/label/Right_Thalamus.label
--meshspace=$SUBJECTS_DIR/surf/rh.white.asc
--targetmasks=$SUBJECTS_DIR/mri/targets.txt
--dir=$SUBJECTS_DIR/HS
--forcedir
--opd
--os2t
--xfm=freesurfer2fa.mat
--seedref=$SUBJECTS_DIR/mri/nifti/brain
--s2tastext
-l
--onewaycondition
-c 0.2
-S 2000
--steplength=0.5
-P 5000
--fibthresh=0.01
--distthresh=0.0
--sampvox=0.0
Running in seedmask mode
load seeds
CSV::set_convention: unknown convention $SUBJECTS_DIR/surf/rh.white.asc
mris_convert $SUBJECTS_DIR/surf/rh.white $SUBJECTS_DIR/Control02/surf/rh.white.asc
Please note that I have already run
mris_convert $SUBJECTS_DIR/surf/rh.white $SUBJECTS_DIR/surf/rh.white.asc
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