FSL -
I have task effect maps from a feat GLM that I would like to parse into separate ROIs (i.e. striatum, ACC, VMPFC, etc). I do not want to intersect the areas with anatomical ROIs as there seems to be overlap across structures (i.e. the striatum activation also slightly hits amygdala/hippocampus).
Is there a more efficient approach than erasing unwanted areas slice x slice. I know XJview and SPM have tools similar to what I describe, but was hoping for a more FSL friendly approach.
Cheers,
Edward
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