Dear FSL experts,
I'm having an odd problem with batching my second-level FEAT analyses, where I average the four sessions per subject for eight contrasts. When I run feat through the GUI everything goes fine, and I get eight copes outputted every time (tried a bunch of different subjects, all fine). However, when I use either a for-loop or submit the feat *.fsf to our computing cluster (necessary, as N>400), for everyone only the first two copes are outputted. Do you have any idea what might be going on here?
Best, Johannes.
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