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CCP4BB  April 2014

CCP4BB April 2014

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Subject:

Re: Pilatus and Strategy wrt Radiation Damage

From:

Harry Powell <[log in to unmask]>

Reply-To:

Harry Powell <[log in to unmask]>

Date:

Wed, 30 Apr 2014 17:41:54 +0100

Content-Type:

multipart/mixed

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text/plain (16 lines) , phiv_rmgif.gif (16 lines) , text/plain (98 lines)

Hi

Marcus Mueller (from Dectris, who develop and manufacture the  
Pilatus) did some work on this a couple of years ago and determined  
that an oscillation angle ~ 0.5x the mosaicity of the crystal (using  
the XDS value of mosaicity, which is not the same as Mosflm's); the  
abstract says -

> The results show that fine ’-slicing can substantially improve  
> scaling statistics and anomalous signal provided that the rotation  
> angle is comparable to half the crystal mosaicity.
>
>
> Acta Cryst. (2012). D68, 42-56    [ doi:10.1107/S0907444911049833 ]
> Optimal fine 


> -slicing for single-photon-counting pixel detectors > > M. Mueller, M. Wang and C. Schulze-Briese > My reading of this is that there is still a place for strategy calculations. On 30 Apr 2014, at Wed30 Apr 15:06, Sanishvili, Ruslan wrote: > Hi Jacob, > > I'll take a first crack as I am sure many will follow. > It is true that with CCD detectors one has to be careful how small > an oscillation range to use for a frame before read noise starts to > eat into the data quality. > Pilatus offers two major new features - is fast and is photon > counting as opposed to integrating detector. > The speed allows to collect data without a shutter and it is very > important as it can dramatically improve data quality. Now there > are fast CCD detectors as well on the market. > Being a photon counter, Pilatus has no "read" noise which, as you > have pointed out, allows you to collect as thin a frame as you > want. However, it is if you consider the detector only. In reality, > if you go very thin and very fast, you may not have enough flux to > record the data. Also, even once we get rid of the shutter, there > are still other sources of instabilities and they do affect the > fast data collection adversely. One could try going (very) thin > sliced and somewhat slow but there is another gotcha there. Most > rotation stages used for rotating the sample crystal, do not like > going extremely slow which would be the case with thin frames and > long exposure times. In this case the speed may not remain as > constant as we would like during data collection. > I think there was a publication from Diamond Synchrotron discussing > strategies of data collection with Pilatus. > We've done a little bit of systematic studies as well and while > things may well be sample- and facility-dependent, ~0.2 degree > frames with ~0.2 sec exposure time seemed to make good compromise > between above-mentioned issues. Here I would like to emphasize > again - there certainly will be samples which will benefit from > somewhat different parameters. > Hope it helps, > Cheers, > N. > > Ruslan Sanishvili (Nukri) > Macromolecular Crystallographer > GM/CA@APS > X-ray Science Division, ANL > 9700 S. Cass Ave. > Lemont, IL 60439 > > Tel: (630)252-0665 > Fax: (630)252-0667 > [log in to unmask] > > > ________________________________________ > From: CCP4 bulletin board [[log in to unmask]] on behalf of > Keller, Jacob [[log in to unmask]] > Sent: Wednesday, April 30, 2014 7:49 AM > To: [log in to unmask] > Subject: [ccp4bb] Pilatus and Strategy wrt Radiation Damage > > Dear Pilatus/Radiation Damage Cognoscenti, > > I read a few years ago, before the advent of Pilatus detectors, > that the best strategy was a sort of compromise between number of > images and detector readout noise "overhead." I have heard that > Pilatus detectors, however, have essentially no readout noise, so I > am wondering whether strategies have changed in light of this, > i.e., is the best practice now to collect as many images as > possible at lowest exposure possible? > > JPK > > ******************************************* > Jacob Pearson Keller, PhD > Looger Lab/HHMI Janelia Farms Research Campus > 19700 Helix Dr, Ashburn, VA 20147 > email: [log in to unmask] > ******************************************* Harry -- ** note change of address ** Dr Harry Powell, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH Chairman of European Crystallographic Association SIG9 (Crystallographic Computing)

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