yes, and http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_adx does this for all frames contributing to SPOT.XDS.
HTH,
Kay
On Tue, 15 Apr 2014 11:38:23 +0100, T. Nakane <[log in to unmask]> wrote:
>Dear Francis,
>
>You can visualize SPOT.XDS with adxv.
>
>Since column 3 of SPOT.XDS is the image number of spot centroid,
>you can extract spots near frame 4 like this:
>
> awk '{if (int($3+0.5) == 4) print $1, $2;}' SPOT.XDS > spots_04.adx
>
>Then you can load "spots_04.adx" into adxv.
>(you must load the image into adxv before reading the spot list)
>
>Best regards,
>
>Takanori Nakane
>
>On 2014-04-15 10:30, Harry Powell wrote:
>> Hi Francis
>>
>> At the risk of offending Wolfgang and Kay, why not try using other
>> software to index & visualize spots found on the images? Mosflm is the
>> one that comes to my mind straight away, but there are others that
>> could probably do the job...
>>
>> It would certainly be possible to write a jiffy that would read a
>> SPOT.XDS and write it in Mosflm .spt format, which could then be read
>> directly into iMosflm.
>>
>> On 15 Apr 2014, at 02:24, Francis Reyes wrote:
>>
>>> Hi all,
>>>
>>> I'm trying to diagnose a tricky indexing issue and I suspect the
>>> spot picking is poor. Any jiffy's for analyzing the spot.xds file
>>> (prior to running IDXREF) ? (like an overlay onto the actual image)?
>>>
>>> Thanks,
>>>
>>> F
>>>
>>> ---------------------------------------------
>>> Francis E. Reyes PhD
>>> 215 UCB
>>> University of Colorado at Boulder
>>>
>>> ----------------------------------------------
>>
>> Harry
>> --** note change of address **
>>
>> Dr Harry Powell, MRC Laboratory of Molecular Biology, Francis Crick
>> Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH
>> Chairman of European Crystallographic Association SIG9
>> (Crystallographic Computing)
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